SMS only showing in homescreen

That helps. Back in Android 5 (Fairphone OS 16.something) the standard App was named “SMS” or something like that. Now with Android 6 Google switched the standard App to “Android Messages”. Perhaps something went wrong with this switch.

Try installing Android Messages from the Google Store.
If that was already installed, try installing SMS Messaging (AOSP) and have a look whether that works any better.

It’s still there without a solution. It was only moved to the Help category so it would be clearer you need help. Didn’t work back then, I guess, please bear with us.

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